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Julien Allali - MiGaL.

Julien Allali

MiGaL

Job submit form: (version 2)

Note: In the software section, the migal software is available for download and there is a tutorial on the pairwise comparison of RNAs and the construction of phylogenetic trees using migal. Here is some already computed comparisons: The data (structures and ps) come from Comparative RNA Web Site.
first rna data format: dot/parenthesis ?
ct or ct2 ?
bpseq ?
xml (migal specific)
first RNA data (secondary structure) upload a file:
or paste data
first RNA postscript representation (optional parameter, only some formats are supported), a default postscript will be generated using RNAplot from Vienna Package
second rna data format: dot/parenthesis ?
ct or ct2 ?
bpseq ?
xml (migal specific)
second RNA data (secondary structure) upload a file:
or paste data
second RNA postscript representation (optional parameter, only some formats are supported)
RNAforester like last level encoding? (allow nucleotide link breaking) yes no
output the sequences alignment from the comparison ? yes no
force hairpin loops to match only hairpin loops ? yes no
Indel-Once: the cost for the deletion of an element is counted only at the level where the deletion occured yes no
tuning parameter for the fusion ? 0.005
0.01
0.015
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