Activities
I'm a PhD in computer sciences since 8th of April 2002, specialized in bio-computing. The topic I'm interested in is the development of algorithms
aiming to detect specific signals (such as transciption binding sites) in DNA sequences.

You can find here the manuscript  (in french) and the tool we made, called SMILE.
 
 

Publications

• International conferences (with program committee)
  
  

  • L. Marsan and M.-F. Sagot
    Extracting structured motifs using a suffix tree - Algorithms and application to consensus identification
    in S. Minoru and R. Shamir (eds.), RECOMB'00, Tokyo, Japon, Proceedings of the Fourth Annual International Conference on Computational Molecular Biology, pages 210-219, ACM Press, 2000
    
    

• International publications (with program commitee)

  • L. Marsan and M.-F. Sagot.
    Algorithms for extracting structured motifs using a suffix tree with application to promoter and regulatory site consensus identification
    J. of Comput. Biol., 7:345-360, 2000.

  • A. Vanet, L. Marsan, and M.-F. Sagot.
    Promoter sequences and algorithmical methods for identifying them.
    Research in Microbiology 150 (1999): 779-799.

  • A. Vanet, L. Marsan, A. Labigne, and M.-F. Sagot.
    Inferring regulatory elements from a whole genome. An analysis of the sigma 80 family of promoter signals.
    J. Mol. Biol. 297(2) (2000): 335-353.

  • D. Arquès, J.-P. Fallot, L. Marsan and C. Michel.
    An evolutionary analytical model of a complementary circular code.
    Biosystems 49(2) (1999): 83-103.
    

• Posters

• A. Vanet, E. Ollivier, L. Marsan and S. Brouillet.
  HIV database.
  JOBIM'05, Lyon, France, 2005.

• S. Brouillet, E. Ollivier, L. Marsan and A. Vanet.
  HIV : from structure to therapeutic target.
  JOBIM'05, Lyon, France, 2005.

• E. Ollivier , S. Brouillet, L. Marsan and A. Vanet.
  HIV : a medicine for one day, a medicine forever.
  JOBIM'05, Lyon, France, 2005.

• L. Marsan, S. Brouillet, E. Ollivier and A. Vanet.
  HIV : towards stable multi-therapies.
  JOBIM'05, Lyon, France, 2005.

• Patents

• A. Vanet, S. Brouillet, E. Ollivier and L. Marsan (2006).
  Nouvelle méthode statistique et résultats bioinformatiques pour l'identification de sites de fixation de médicaments contre les virus à haut taux de mutabilité.
  En cours.

• A. Vanet, S. Brouillet, L. Marsan and E. Ollivier (2006).
  Continuation In Part (CIP) n°13052-US-02 du brevet n° 10/734023 (CNRS, 2006)
  Method for identifying motifs and/or combinations of motifs having a boolean state of predetermined mutation in a set of sequences and its applications
  


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